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Cell Signalling Biology Michael J. Berridge  Module 2  Cell Signalling Pathways                2  42




             Module 2:  Table continued
                                             Substrate         Product            Comments
             Synaptojanin 1 (SJ1)            PtdIns4,5P 2      PtdIns4P           Step 8 in Module 2: Figure
                                                                                   phosphoinositide metabolism.
             Synaptojanin 1 (SJ1)            PtdIns4,5P 2      PtdIns4P           Removes protein coates following
                                                                                   scission of endocytic vesicles
                                                                                   (Module 4: Figure scission of
                                                                                   endocytic vesicles)
             Oculocerebrorenal syndrome of Lowe  PtdIns4,5P 2  PtdIns4P           Mutations of OCRL cause Lowe’s
               (OCRL)                                                              syndrome
                                             PtdIns3,4,5P 3    PtdIns3,4P 2
             Sac3                            PtdIns3,5P 2      PtdIns3P           Mammalian homologue of yeast Fig4 is
                                                                                   part of the PAS complex (Module 2:
                                                                                   PIKfyve activation)





              1. The Class III PtdIns 3-kinase (PtdIns 3-K) adds  the 5-position of PtdIns3,4P 2 by the PtdIns4P 5-k-
                a phosphate to the 3-position of PtdIns to form  inase (PtdIns4P 5-K) (i.e. the same enzyme used for
                PtdIns3P.                                        Step 8).
              2. PtdIns 4-kinase (PtdIns 4-K) adds a phosphate to  11. The myotubularins remove the 3-phosphate from
                the 4-position of PtdIns to form PtdIns4P. It can  PtdIns3P and also from PtdIns3,5P 2 .
                also be formed by removal of the 3-phosphate from  12. The 5-phosphate on PtdIns4,5P 2 is removed by vari-
                PtdIns3,4P 2 by phosphatase and tensin homologue  ous lipid phosphatases such as oculocerebrorenal syn-
                deleted on chromosome 10 (PTEN).                 drome of Lowe (OCRL) and the synaptojanins.
              3. The PIKfyve kinase is thought to be responsible for  13. The 5-phosphate on PtdIns3,5P 2 is removedbythe
                adding a phosphate to the 5-position of PtdIns to form  Sac domain phosphatase Sac3, which is an orthologue
                PtdIns5P.                                        of yeast Fig 4.
              4. The PIKfyve also adds a phosphate to the 5-position
                of PtdIns3P to form PtdIns3,5P 2 .The formationof  Inositol lipid kinases
                PtdIns3,5P 2 , which changes in cells following osmotic  There are a number of inositol lipid kinases that function
                stress, is a key component of the PtdIns3,5P 2 sig-  to phosphorylate hydroxyls on the inositol headgroup of
                nalling cassette (Module 2: Figure PIKfyve activation).
              5. Types I and II PtdIns 3-kinase (PtdIns 3-K) add  phosphatidylinositol.
                a phosphate to the 3-position of PtdIns4P to form
                PtdIns3,4P 2 . PtdIns3,4P 2 has been suggested to func-  PtdIns 3-kinase (PtdIns 3-K)
                tion as a messenger operating within the plasma mem-  The PtdIns 3-kinases (PtdIns 3-Ks) are a family of en-
                brane, where it serves to recruit and activate protein  zymes that have been classified into three classes (Module
                                                              2: Figure PI 3-K family).
                kinases such as protein kinase B (PKB). PtdIns3,4P 2
                can also be formed by other enzymes (see Steps 6 and
                7).                                           Class I PtdIns 3-kinases
              6. PtdInsP kinase II adds a phosphate to the 4-position  The primary function of the Class I PtdIns 3-kinases is to
                of PtdIns3P to form PtdIns3,4P 2 . The same enzyme  phosphorylate PtdIns4,5P 2 to form the lipid second mes-
                can add a phosphate to the 4-position of PtdIns5P to  senger PtdIns3,4,5P 3 (Module 2: Figure PtdIns 3-kinase
                form PtdIns4,5P 2 .                           signalling). These Class I enzymes are divided into two
              7. Inositol polyphosphate 5-phosphatase such as Src ho-  groups: five regulatory subunits and three catalytic sub-
                mology 2 (SH2) domain-containing inositol phos-  units (Module 2: Figure PI 3-K family).
                phatase (SHIP) removes a phosphate from the 5-  The Class IA enzymes are heterodimers that are formed
                position of PtdIns 3,4,5P 3 to form PtdIns3,4P 2 .  from a regulatory subunit combining with a catalytic sub-
              8. A PtdIns4P 5-kinase (PtdIns4P 5-K) adds a phosphate  unit. There are five regulatory subunits (p85α,p85β,p55α,
                to the 5-position of PtdIns4P to form PtdIns4,5P 2 .  p50α and p55γ), which are typical adaptor proteins. The
                The latter can also be formed by Steps 6 and 9.  p85 regulatory subunit contains an Src homology 3 (SH3)
                PtdIns4P5-K can also phosphorylate PtdIns3,4P 2 to  domain, a breakpoint-cluster-region homology (BH) do-
                form PtdIns3,4,5P 3 .                         main, two proline-rich regions (P) on either side of the
              9. Phosphatase and tensin homologue deleted on chro-  BH domain and two Src homology (SH2) domains that
                mosome 10 (PTEN) removes a phosphate from the  are separated by a p110-binding domain, enabling them to
                3-position of PtdIns3,4,5P 3 .                interact with a p85-binding domain located on the three
             10. A Class I PtdIns 3-kinase adds a phosphate to the  catalytic subunits (p110α, p110β and p110δ). The differ-
                3-position of PtdIns4,5P 2 to form PtdIns3,4,5P 3 .  ent binding domains on the regulatory subunits enhance
                PtdIns3,4,5P 3 , which functions as one of the second  the versatility of the Class IA enzyme by enabling the
                messengers in the PtdIns 3-kinase signalling pathway,  catalytic subunit to be activated by interacting with a vari-
                can also be formed by the addition of a phosphate to  ety of signalling molecules:




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